drake_md_report

HYPOTHESES

C amendments will increase diversity of SOM molecules
C amendments will cause a depletion of aromatic molecules, especially in fine pores
Homogenization will increase (a) total peaks, (b) diversity of peaks, (c) aromatic peaks

We selected only peaks seen in >1 of the 4 replicates (i.e. n = 2 or 3 or 4)

setup

how many FTICR reps per treatment type?

so we select formulae seen in at least 2 reps per treatment type

van krevelens

domains, baseline

fticr domains

VK by replication

VK by treatment

VK diagrams by treatment

VK unique

unique to each amendment, in each incubation type

relative abundances

STATS

PERMANOVA

PCA

overall PCA

PCA individual treatments

individual cores

Session Info

click to expand

Date run: 2020-08-10

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#> other attached packages:
#>  [1] visNetwork_2.0.9 vegan_2.5-6      lattice_0.20-41  permute_0.9-5    rmarkdown_2.3    drake_7.12.4     ggbiplot_0.55   
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